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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_821774_822205_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
821774 - 822205
Intron Length:
432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGCCTG
5'SS Class:
major
3'SS Sequence:
TTCTGTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
TTATAACTAACT
Flanking Amino Acid:
APQTLWDSTGECGERPLIDK
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
58
46.3
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
84.4
0.77
0.7
80.5
31.5
Minor 5ss
47.7
-0.2
2.8
61.5
44.3
Minor BPS
53.3
0.18
2.1
80.62
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012509
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013020
821575 - 824302
2728