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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_822405_823026_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
822405 - 823026
Intron Length:
622

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAGGTATT
5'SS Class:
major
3'SS Sequence:
CGTTCTTTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTCATATTGATT
Flanking Amino Acid:
VTAGHCTTGRKDPYFWRAVL
Intron Amino Acid Position:
99

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
84.6
33.2
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
77.9
0.63
0.8
76.7
31.9
Minor 5ss
42
-0.9
3.2
59.7
39.1
Minor BPS
53.2
0.18
1.6
72.19
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012509
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013020
821575 - 824302
2728