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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_847327_847510_R

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
847327 - 847510
Intron Length:
184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGGCAG
5'SS Class:
major
3'SS Sequence:
TTTTCCTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATACATTTCATT
Flanking Amino Acid:
RRTELTAASGERHDALYVVG
Intron Amino Acid Position:
1330

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
60.7
45.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
84.7
0.78
0.7
77.6
31.2
Minor 5ss
29
-2.4
3.4
37.7
47.1
Minor BPS
47.1
-0.1
1.9
65.58
39.1

Associated Gene:

Gene:
DIP2B
Ensembl Gene ID:
ENSAPLG00000012628
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042837
846434 - 874512
28079
ENSAPLT00000021477
846434 - 874512
28079
ENSAPLT00000018718
846434 - 874512
28079
ENSAPLT00000013243
846434 - 881683
35250