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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_847689_848296_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
847689 - 848296
Intron Length:
608

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCACA
5'SS Class:
strong_major
3'SS Sequence:
ACTTCTAATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
AATTTTTCCACT
Flanking Amino Acid:
GPLGDSHLGEIWVNSPHTAS
Intron Amino Acid Position:
1271

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
80.7
33.8
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
72.9
0.52
1
66.5
38
Minor 5ss
39.7
-1.2
2.8
49.8
46.2
Minor BPS
49.2
0.02
1.9
71.17
40

Associated Gene:

Gene:
DIP2B
Ensembl Gene ID:
ENSAPLG00000012628
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021477
846434 - 874512
28079
ENSAPLT00000018718
846434 - 874512
28079
ENSAPLT00000013243
846434 - 881683
35250
ENSAPLT00000042837
846434 - 874512
28079