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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_848372_848925_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
848372 - 848925
Intron Length:
554

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTGTGACCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTTTGTGACCT
Flanking Amino Acid:
QSLLLSESGKILPGVKVVIV
Intron Amino Acid Position:
1246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1.1
77.7
33.5
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
71.2
0.48
0.9
67.7
39.2
Minor 5ss
46
-0.4
2.5
59.7
44.7
Minor BPS
49.3
0.03
2.4
80.07
42.1

Associated Gene:

Gene:
DIP2B
Ensembl Gene ID:
ENSAPLG00000012628
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021477
846434 - 874512
28079
ENSAPLT00000018718
846434 - 874512
28079
ENSAPLT00000013243
846434 - 881683
35250
ENSAPLT00000042837
846434 - 874512
28079