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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_851771_852412_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
851771 - 852412
Intron Length:
642

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGTAA
5'SS Class:
major
3'SS Sequence:
TTTGCTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAG
U12 Branch Point Sequence:
AATTTCAGCACA
Flanking Amino Acid:
STTGMLTGVKMSHAAVSGLC
Intron Amino Acid Position:
1049

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
65.4
36.8
Major BPS
67.2
0.43
1.5
77.4
37.3
Major PPT
82.4
0.73
0.9
76.8
37.3
Minor 5ss
34.3
-1.8
3.5
46.3
49
Minor BPS
44.9
-0.4
2.1
60.74
38.7

Associated Gene:

Gene:
DIP2B
Ensembl Gene ID:
ENSAPLG00000012628
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042837
846434 - 874512
28079
ENSAPLT00000021477
846434 - 874512
28079
ENSAPLT00000018718
846434 - 874512
28079
ENSAPLT00000013243
846434 - 881683
35250