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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_852523_853174_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
852523 - 853174
Intron Length:
652

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGGTCC
5'SS Class:
major
3'SS Sequence:
CTTTCTTGCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
CTTTCTTGCACA
Flanking Amino Acid:
VKTWPTIIDTDDLPRKRLSQ
Intron Amino Acid Position:
1012

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
65.3
35
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
79.4
0.66
0.9
75.4
33.1
Minor 5ss
38.6
-1.3
3.1
50.4
46.4
Minor BPS
56.1
0.19
1.9
71.68
40.8

Associated Gene:

Gene:
DIP2B
Ensembl Gene ID:
ENSAPLG00000012628
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021477
846434 - 874512
28079
ENSAPLT00000018718
846434 - 874512
28079
ENSAPLT00000013243
846434 - 881683
35250
ENSAPLT00000042837
846434 - 874512
28079