About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_853856_854906_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
853856 - 854906
Intron Length:
1051

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCAAG
5'SS Class:
strong_major
3'SS Sequence:
CGTGTCCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATCCAC
U12 Branch Point Sequence:
CATGCTACAGCC
Flanking Amino Acid:
GDNVVLLYPPGIELITAFYG
Intron Amino Acid Position:
934

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
70.6
41.3
Major BPS
48.9
-0
1.2
59.8
36.5
Major PPT
76.7
0.6
0.9
69.4
36.8
Minor 5ss
38.9
-1.3
2.9
45.6
43.8
Minor BPS
40.4
-0.7
1.9
48.48
41.5

Associated Gene:

Gene:
DIP2B
Ensembl Gene ID:
ENSAPLG00000012628
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021477
846434 - 874512
28079
ENSAPLT00000018718
846434 - 874512
28079
ENSAPLT00000013243
846434 - 881683
35250
ENSAPLT00000042837
846434 - 874512
28079