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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_855669_855808_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
855669 - 855808
Intron Length:
140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATCGG
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTGTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TAGTGTTTAATT
Flanking Amino Acid:
QLEDNDLVKKHQFLTEVLQW
Intron Amino Acid Position:
866

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
66
45.4
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
85.3
0.79
0.8
83.6
31.4
Minor 5ss
33
-1.9
2.9
41.4
45
Minor BPS
63
0.49
1.7
76.46
40.9

Associated Gene:

Gene:
DIP2B
Ensembl Gene ID:
ENSAPLG00000012628
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021477
846434 - 874512
28079
ENSAPLT00000018718
846434 - 874512
28079
ENSAPLT00000013243
846434 - 881683
35250
ENSAPLT00000042837
846434 - 874512
28079