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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_856751_857699_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
856751 - 857699
Intron Length:
949

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCCA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTCAA
U12 Branch Point Sequence:
CAAGCGACAACC
Flanking Amino Acid:
SFQWMSRVLQAIDSIHQVGV
Intron Amino Acid Position:
762

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
71.6
40.2
Major BPS
65.2
0.38
1.2
69.6
37.5
Major PPT
83.4
0.75
0.7
77.1
31.6
Minor 5ss
38.2
-1.3
3
48.7
47
Minor BPS
38
-0.9
2.3
45.58
42.5

Associated Gene:

Gene:
DIP2B
Ensembl Gene ID:
ENSAPLG00000012628
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021477
846434 - 874512
28079
ENSAPLT00000018718
846434 - 874512
28079
ENSAPLT00000013243
846434 - 881683
35250
ENSAPLT00000042837
846434 - 874512
28079