Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_859321_859539_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

859321 - 859539

Intron Length:

219

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTATGTATA

5'SS Class:

strong_major

3'SS Sequence:

CCTTCTGTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCCAAT

U12 Branch Point Sequence:

TTTGCCTCCAAT

Flanking Amino Acid:

LAGLTKNTFEVIPVNSAGSP

Intron Amino Acid Position:

654

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.9

0.96

0.8

88.8

Major BPS

59.5

0.24

1.3

68.4

35.9

Major PPT

81.4

0.71

0.8

75.8

32.6

Minor 5ss

45.4

-0.5

2.5

59.5

45.1

Minor BPS

49.6

0.05

2.2

77.48

44.6

Associated Gene:

Gene:

DIP2B

Ensembl Gene ID:

ENSAPLG00000012628

Chromosome:

PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021477

846434 - 874512

28079

ENSAPLT00000018718

846434 - 874512

28079

ENSAPLT00000013243

846434 - 881683

35250

ENSAPLT00000042837

846434 - 874512

28079