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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_860039_860670_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
860039 - 860670
Intron Length:
632

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGGGC
5'SS Class:
major
3'SS Sequence:
GTGTCCTTCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TGTCCTTCAAAG
Flanking Amino Acid:
SPEAMTIAIRRPGVPGAPLP
Intron Amino Acid Position:
561

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
65.1
40.9
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
63.4
0.3
1.1
63.1
37.5
Minor 5ss
29.6
-2.3
3.5
41.6
45.1
Minor BPS
51.5
-0
1.7
59.61
41.6

Associated Gene:

Gene:
DIP2B
Ensembl Gene ID:
ENSAPLG00000012628
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042837
846434 - 874512
28079
ENSAPLT00000021477
846434 - 874512
28079
ENSAPLT00000018718
846434 - 874512
28079
ENSAPLT00000013243
846434 - 881683
35250