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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_863293_864025_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
863293 - 864025
Intron Length:
733

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAC
U12 Branch Point Sequence:
CACACCATGACC
Flanking Amino Acid:
AAGTEPAYIEYKTSKEGSVM
Intron Amino Acid Position:
396

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.7
1.08
0.7
85.2
32.2
Major BPS
67.8
0.44
1
75
30.1
Major PPT
92.8
0.96
0.6
88.9
20.3
Minor 5ss
34.4
-1.8
3.3
49.7
46.6
Minor BPS
49.2
-0
1.7
56.48
42

Associated Gene:

Gene:
DIP2B
Ensembl Gene ID:
ENSAPLG00000012628
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021477
846434 - 874512
28079
ENSAPLT00000018718
846434 - 874512
28079
ENSAPLT00000013243
846434 - 881683
35250
ENSAPLT00000042837
846434 - 874512
28079