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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_864776_866261_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
864776 - 866261
Intron Length:
1486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACGTTG
5'SS Class:
major
3'SS Sequence:
CCTCTTTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
CTCTTCTCCATG
Flanking Amino Acid:
VPIEVPLTRKDAGGQQIGFL
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.2
70.4
42.5
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
81.4
0.71
0.7
79.9
25.5
Minor 5ss
45.9
-0.4
3.2
64.1
47.4
Minor BPS
45.3
-0.5
2
50.15
44.9

Associated Gene:

Gene:
DIP2B
Ensembl Gene ID:
ENSAPLG00000012628
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042837
846434 - 874512
28079
ENSAPLT00000021477
846434 - 874512
28079
ENSAPLT00000018718
846434 - 874512
28079
ENSAPLT00000013243
846434 - 881683
35250