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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_867391_868000_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
867391 - 868000
Intron Length:
610

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAGCA
5'SS Class:
strong_major
3'SS Sequence:
GAATTTTCTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTGAA
U12 Branch Point Sequence:
CATTGTTGAATT
Flanking Amino Acid:
FVDDFEEIVEVPQPDPNQPK
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
1
70.7
33.2
Major BPS
72
0.55
1.1
63.4
44.3
Major PPT
77.3
0.61
0.9
74
41
Minor 5ss
30.8
-2.2
3.3
40
45.5
Minor BPS
51
0.11
1.9
69.43
42.1

Associated Gene:

Gene:
DIP2B
Ensembl Gene ID:
ENSAPLG00000012628
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042837
846434 - 874512
28079
ENSAPLT00000021477
846434 - 874512
28079
ENSAPLT00000013243
846434 - 881683
35250