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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_874126_874355_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
874126 - 874355
Intron Length:
230

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGGGA
5'SS Class:
strong_major
3'SS Sequence:
GGCCTGAATGCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
GCCTTCTTGATT
Flanking Amino Acid:
GGARDERYRSALQCQLFTER
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
65.8
40
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
59.1
0.2
1.1
51
41.9
Minor 5ss
28.7
-2.4
3.5
34.8
43.6
Minor BPS
64.2
0.53
1.2
70.59
41.2

Associated Gene:

Gene:
DIP2B
Ensembl Gene ID:
ENSAPLG00000012628
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021477
846434 - 874512
28079
ENSAPLT00000042837
846434 - 874512
28079