Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_8921_9146_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8921 - 9146

Intron Length:

226

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGGGTT

5'SS Class:

strong_major

3'SS Sequence:

TGTCCTTACTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCTTAC

U12 Branch Point Sequence:

TTGTCCTTACTC

Flanking Amino Acid:

RAEIESVKKQNQQLQAAIAE

Intron Amino Acid Position:

433

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.2

0.76

77.1

35.1

Major BPS

68.9

0.47

59.6

38.6

Major PPT

0.56

0.9

73.4

36.1

Minor 5ss

33.8

-1.8

54.5

49.7

Minor BPS

71.2

0.65

1.6

77.89

38.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019239

Chromosome:

PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028150

6338 - 10090

3753