Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_918433_918633_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

918433 - 918633

Intron Length:

201

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGTCC

5'SS Class:

strong_major

3'SS Sequence:

CTTGGTCCCAAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATGTAAA

U12 Branch Point Sequence:

TGGTATGTAAAC

Flanking Amino Acid:

ASAAPPVSMQEPRKLSYAEV

Intron Amino Acid Position:

692

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.5

0.93

0.9

76.6

33.4

Major BPS

66.4

0.41

1.1

67.7

36.5

Major PPT

60.6

0.24

1.1

59.5

36.1

Minor 5ss

-1.4

3.2

50.9

45.8

Minor BPS

44.9

-0.4

2.2

57.11

41.4

Associated Gene:

Gene:

LARP4

Ensembl Gene ID:

ENSAPLG00000013661

Chromosome:

PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014284

916111 - 935077

18967