Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_919751_919944_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

919751 - 919944

Intron Length:

194

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTAAGTTCC

5'SS Class:

strong_major

3'SS Sequence:

TTTCTTTCTCTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTAACAT

U12 Branch Point Sequence:

TCTTTGTTAACA

Flanking Amino Acid:

RRRREDDRISRPQPSVETKT

Intron Amino Acid Position:

542

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.6

0.86

0.9

76.2

34.2

Major BPS

0.52

1.1

77.7

35.3

Major PPT

87.5

0.84

0.6

81.5

30.5

Minor 5ss

41.9

-0.9

2.7

42.2

Minor BPS

66.1

0.5

2.1

78.35

38.8

Associated Gene:

Gene:

LARP4

Ensembl Gene ID:

ENSAPLG00000013661

Chromosome:

PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014284

916111 - 935077

18967