About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_920976_923810_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
920976 - 923810
Intron Length:
2835

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGCTAG
5'SS Class:
major
3'SS Sequence:
ATGTGTCCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAC
U12 Branch Point Sequence:
AACTCTGGACTG
Flanking Amino Acid:
LSIGRPFHRNRVKPHFRSSN
Intron Amino Acid Position:
447

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
66.2
42.1
Major BPS
67.4
0.43
1
73.2
28.9
Major PPT
73.9
0.54
0.9
66.8
40
Minor 5ss
43.7
-0.7
2.9
56.3
47.9
Minor BPS
38
-1
2.1
38.93
39

Associated Gene:

Gene:
LARP4
Ensembl Gene ID:
ENSAPLG00000013661
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014284
916111 - 935077
18967