About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_928505_929205_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
928505 - 929205
Intron Length:
701

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGCTGT
5'SS Class:
major
3'SS Sequence:
GTTCTTTTACCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATGAT
U12 Branch Point Sequence:
TGTTCTTTTACC
Flanking Amino Acid:
TAAAQGTHPEGNIEISEDSC
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
65.8
42.7
Major BPS
69.5
0.48
1.2
59.7
46.7
Major PPT
80
0.68
0.9
73.9
40.4
Minor 5ss
39.7
-1.2
3.1
47.2
48.2
Minor BPS
71.4
0.66
1.6
79.48
35.6

Associated Gene:

Gene:
LARP4
Ensembl Gene ID:
ENSAPLG00000013661
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014284
916111 - 935077
18967