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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_929354_934840_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
929354 - 934840
Intron Length:
5487

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCCG
5'SS Class:
strong_major
3'SS Sequence:
CTGCTCTCTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
TTTTTCCTAACA
Flanking Amino Acid:
GGGTMLLFVEQVTSKGAGLN
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
63.1
43
Major BPS
72
0.55
1
71.8
31.4
Major PPT
79.9
0.67
0.8
77.1
31.6
Minor 5ss
25.6
-2.8
3
30.2
43
Minor BPS
75.9
0.81
1.6
87.87
29.2

Associated Gene:

Gene:
LARP4
Ensembl Gene ID:
ENSAPLG00000013661
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014284
916111 - 935077
18967