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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_948014_950652_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

948014 - 950652

Intron Length:

2639

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTGAGTTGA

5'SS Class:

strong_major

3'SS Sequence:

TCTTCCTGTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTGAC

U12 Branch Point Sequence:

TCTGTATTGACT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.73

0.9

73.9

Major BPS

78.7

0.71

0.9

69.3

37.7

Major PPT

76.9

0.61

0.8

73.2

31.7

Minor 5ss

35.8

-1.6

2.8

40.4

Minor BPS

56.9

0.3

1.8

75.44

41.7

Associated Gene:

Gene:

LIMA1

Ensembl Gene ID:

ENSAPLG00000006766

Chromosome:

PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039005

947842 - 971834

23993