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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_950564_950652_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
950564 - 950652
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTCCTGAG
5'SS Class:
weak_major
3'SS Sequence:
TCTTCCTGTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
TCTGTATTGACT
Flanking Amino Acid:
MLGVHGDKMEPS
Intron Amino Acid Position:
3

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.2
0.22
1.4
55.5
43.7
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
76.9
0.61
0.8
73.2
31.7
Minor 5ss
32.9
-2
3.2
41
45.4
Minor BPS
56.9
0.3
1.8
75.44
41.7

Associated Gene:

Gene:
LIMA1
Ensembl Gene ID:
ENSAPLG00000006766
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007053
950557 - 971834
21278