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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_950789_953405_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
950789 - 953405
Intron Length:
2617

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTCTCGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAAAAA
U12 Branch Point Sequence:
TTTTTCTCCATT
Flanking Amino Acid:
KSSALLERFSRYQKAAEEAT
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
25.6
Major BPS
61.4
0.28
1.1
67.9
34.4
Major PPT
72.6
0.51
1
74.5
27.9
Minor 5ss
35.3
-1.7
3.2
50.4
46
Minor BPS
59.2
0.37
2
83.48
38.1

Associated Gene:

Gene:
LIMA1
Ensembl Gene ID:
ENSAPLG00000006766
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025848
946987 - 971834
24848
ENSAPLT00000023318
946987 - 971834
24848
ENSAPLT00000007053
950557 - 971834
21278
ENSAPLT00000039005
947842 - 971834
23993