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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_953452_955482_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
953452 - 955482
Intron Length:
2031

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
TTGTTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
CTGGAATTAACT
Flanking Amino Acid:
EEATAEKKRSSTENLPPHFK
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1.1
79.9
34.9
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
89.2
0.88
0.7
84.7
30.1
Minor 5ss
38.2
-1.3
3
52.2
44.4
Minor BPS
50.5
0.09
1.9
69.87
46.6

Associated Gene:

Gene:
LIMA1
Ensembl Gene ID:
ENSAPLG00000006766
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025848
946987 - 971834
24848
ENSAPLT00000023318
946987 - 971834
24848
ENSAPLT00000007053
950557 - 971834
21278
ENSAPLT00000039005
947842 - 971834
23993