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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_955942_961242_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
955942 - 961242
Intron Length:
5301

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGATC
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTCTACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTGAT
U12 Branch Point Sequence:
TTGTCTCTACCA
Flanking Amino Acid:
FEKGEAAQTKVPRDQRKTAV
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
1
0.8
86
30.3
Major BPS
67.4
0.43
1.1
57.1
41.8
Major PPT
77.2
0.61
0.9
70.9
39.8
Minor 5ss
36.8
-1.5
3.3
51.2
45.7
Minor BPS
54.9
0.15
2
71.56
40.9

Associated Gene:

Gene:
LIMA1
Ensembl Gene ID:
ENSAPLG00000006766
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007053
950557 - 971834
21278
ENSAPLT00000039005
947842 - 971834
23993
ENSAPLT00000025848
946987 - 971834
24848
ENSAPLT00000023318
946987 - 971834
24848