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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_961352_962157_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
961352 - 962157
Intron Length:
806

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
AATTCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TACTCTTTATTC
Flanking Amino Acid:
GQGERSHSTSGHLVDTSPAL
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
1.2
87
30
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
82.6
0.73
0.9
73.8
40.7
Minor 5ss
32.8
-2
2.7
42.5
44.3
Minor BPS
61.2
0.33
1.6
66.86
39.5

Associated Gene:

Gene:
LIMA1
Ensembl Gene ID:
ENSAPLG00000006766
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025848
946987 - 971834
24848
ENSAPLT00000023318
946987 - 971834
24848
ENSAPLT00000007053
950557 - 971834
21278
ENSAPLT00000039005
947842 - 971834
23993