Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_962319_964605_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

962319 - 964605

Intron Length:

2287

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTAAGTCTG

5'SS Class:

strong_major

3'SS Sequence:

CTTTATTCTATAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTCAA

U12 Branch Point Sequence:

AGTGCTTTATTC

Flanking Amino Acid:

QGSSTGLATTNEIQASESEL

Intron Amino Acid Position:

307

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.5

0.84

73.1

43.9

Major BPS

78.4

0.71

0.9

81.3

29.8

Major PPT

81.9

0.72

0.8

76.8

31.6

Minor 5ss

38.3

-1.3

51.2

45.1

Minor BPS

52.2

0.05

1.7

60.91

39.1

Associated Gene:

Gene:

LIMA1

Ensembl Gene ID:

ENSAPLG00000006766

Chromosome:

PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039005

947842 - 971834

23993

ENSAPLT00000025848

946987 - 971834

24848

ENSAPLT00000007053

950557 - 971834

21278