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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_966752_967288_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
966752 - 967288
Intron Length:
537

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCACT
5'SS Class:
strong_major
3'SS Sequence:
TCTGCTCCCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
AGTATCGTAATT
Flanking Amino Acid:
FHSSLSEDGNVGQNLESETE
Intron Amino Acid Position:
362

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
77.1
37.8
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
72.1
0.5
0.8
70
30.9
Minor 5ss
42.2
-0.9
2.9
56.1
42.2
Minor BPS
51.3
0.12
2
71.37
39.8

Associated Gene:

Gene:
LIMA1
Ensembl Gene ID:
ENSAPLG00000006766
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025848
946987 - 971834
24848
ENSAPLT00000023318
946987 - 971834
24848
ENSAPLT00000007053
950557 - 971834
21278
ENSAPLT00000039005
947842 - 971834
23993