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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_975423_980823_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
975423 - 980823
Intron Length:
5401

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
GGAACTCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTGTTTGGAACT
Flanking Amino Acid:
GIFAVRLLFERFIAKPCAIN
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
67.8
0.4
1
62.3
44
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
50.5
0.1
2.1
75.75
41.5

Associated Gene:

Gene:
CERS5
Ensembl Gene ID:
ENSAPLG00000006809
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007088
975223 - 990402
15180