About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_980930_983036_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
980930 - 983036
Intron Length:
2107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
CATTTTCCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
ACTTGTTTCATT
Flanking Amino Acid:
LEKVFTSITKSPDGKRLEGL
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
77.5
32.9
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
84.2
0.77
0.8
81.6
30
Minor 5ss
29.1
-2.4
2.8
34.7
41.7
Minor BPS
48.6
-0
2.1
69.15
43

Associated Gene:

Gene:
CERS5
Ensembl Gene ID:
ENSAPLG00000006809
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007088
975223 - 990402
15180