About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_983168_984124_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
983168 - 984124
Intron Length:
957

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTATGTTTG
5'SS Class:
weak_major
3'SS Sequence:
CTTCTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TATTTCATACAT
Flanking Amino Acid:
PTTLTKFCESMWRFTFYLSI
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.1
73.5
38
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
92.7
0.96
0.6
91.6
19.6
Minor 5ss
58.2
0.28
2.3
70.9
39.7
Minor BPS
50.2
0.09
2
75.18
41.1

Associated Gene:

Gene:
CERS5
Ensembl Gene ID:
ENSAPLG00000006809
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007088
975223 - 990402
15180