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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_984816_985470_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
984816 - 985470
Intron Length:
655

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGACGT
5'SS Class:
major
3'SS Sequence:
GTTTGTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TGTCTTCTAACT
Flanking Amino Acid:
RQCWYNYPFQPLTSRLYYYY
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
66.4
45.1
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
85.4
0.8
0.9
76.9
42.1
Minor 5ss
32.3
-2
3.4
47.9
47.6
Minor BPS
59.8
0.39
1.7
78.64
37.2

Associated Gene:

Gene:
CERS5
Ensembl Gene ID:
ENSAPLG00000006809
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007088
975223 - 990402
15180