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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_987429_989310_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
987429 - 989310
Intron Length:
1882

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCACC
5'SS Class:
strong_major
3'SS Sequence:
GGATCTCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
TGTTTCTGGATC
Flanking Amino Acid:
IVTRLGIYPFWILNTTLFES
Intron Amino Acid Position:
292

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
71.5
38.5
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
68.3
0.41
0.9
58.8
42.8
Minor 5ss
40.8
-1
2.8
50.5
40
Minor BPS
61.2
0.34
1.4
70.58
34.7

Associated Gene:

Gene:
CERS5
Ensembl Gene ID:
ENSAPLG00000006809
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007088
975223 - 990402
15180