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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000235.1_135729_136118_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
135729 - 136118
Intron Length:
390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TTCACTTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
CCTCTCTTCACT
Flanking Amino Acid:
DPVVAIDNKKGLSHPFSIDI
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
72.2
39.5
Major BPS
77.5
0.68
1
79.6
33
Major PPT
77
0.61
0.8
69.1
36.9
Minor 5ss
34.3
-1.8
2.9
43
44.2
Minor BPS
57.4
0.31
1.8
72.32
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023380
Chromosome:
PEDO01000235.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029399
134237 - 138512
4276