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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000235.1_137372_137994_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
137372 - 137994
Intron Length:
623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGCAGG
5'SS Class:
major
3'SS Sequence:
CTCTGCCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
GCGTCCTGATCC
Flanking Amino Acid:
TGLRGGGVLCGCPDGKIAPS
Intron Amino Acid Position:
500

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1.1
59.7
46.7
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
71.8
0.49
0.8
64.6
31
Minor 5ss
32.9
-2
2.8
31.4
42.5
Minor BPS
51.7
0.03
1.8
59.95
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023380
Chromosome:
PEDO01000235.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029399
134237 - 138512
4276