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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000235.1_165051_168402_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
165051 - 168402
Intron Length:
3352

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTGAGTCCC
5'SS Class:
major
3'SS Sequence:
TCTCTCTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TATTTTTCATTT
Flanking Amino Acid:
FSRHVKRHPGLVPLIGFISV
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.47
1.1
59.5
39.8
Major BPS
100
1.24
0.5
100
0
Major PPT
85.8
0.81
0.7
80.7
24.4
Minor 5ss
31.3
-2.1
2.8
33.6
34.8
Minor BPS
52
0.14
1.7
72.57
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026322
Chromosome:
PEDO01000235.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028551
163568 - 169620
6053