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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000235.1_17731_17867_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17731 - 17867
Intron Length:
137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGCACT
5'SS Class:
major
3'SS Sequence:
TGTTGCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TCACAACTAACC
Flanking Amino Acid:
GTGVETVVSADLPNAHGLSV
Intron Amino Acid Position:
464

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
71.4
40.3
Major BPS
85
0.87
0.8
85.6
23
Major PPT
81.6
0.71
0.9
77.7
36.7
Minor 5ss
35.2
-1.7
3.2
49
47
Minor BPS
44.3
-0.4
2
56.31
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029877
Chromosome:
PEDO01000235.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019871
17552 - 23789
6238