Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000235.1_179849_180059_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

179849 - 180059

Intron Length:

211

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGCAG

5'SS Class:

strong_major

3'SS Sequence:

TCCCGCCCCCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACCTCAC

U12 Branch Point Sequence:

TCACCCACACCC

Flanking Amino Acid:

IGQITLKKDQIVVQKGEEVN

Intron Amino Acid Position:

336

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.78

0.9

65.6

41.7

Major BPS

63.6

0.34

65.3

32.1

Major PPT

67.5

0.39

0.8

57.6

33.3

Minor 5ss

24.7

-2.9

28.6

43.8

Minor BPS

43.4

-0.5

54.21

43.1

Associated Gene:

Gene:

STAC3

Ensembl Gene ID:

ENSAPLG00000004189

Chromosome:

PEDO01000235.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004298

179750 - 184594

4845