Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000235.1_180198_180412_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

180198 - 180412

Intron Length:

215

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTAAGGCTG

5'SS Class:

major

3'SS Sequence:

GGACTTCTTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CATCCAT

U12 Branch Point Sequence:

CATCCATGGACT

Flanking Amino Acid:

VDDSNEEWWRGKIGEKIGYF

Intron Amino Acid Position:

290

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.8

0.68

1.1

64.3

47.1

Major BPS

57.2

0.18

1.3

68.1

Major PPT

73.8

0.54

69.7

41.3

Minor 5ss

33.9

-1.8

3.4

39.3

Minor BPS

1.8

68.02

42.2

Associated Gene:

Gene:

STAC3

Ensembl Gene ID:

ENSAPLG00000004189

Chromosome:

PEDO01000235.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004298

179750 - 184594

4845