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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000235.1_187269_187612_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
187269 - 187612
Intron Length:
344

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAACGG
5'SS Class:
major
3'SS Sequence:
TTTATTCTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTCTTTAAG
Flanking Amino Acid:
HNQPNYNTHQGQTGMKHGNR
Intron Amino Acid Position:
910

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
59.7
45.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
79.3
0.66
1
83.7
31.6
Minor 5ss
30.7
-2.2
3.1
39.3
45.9
Minor BPS
56.1
0.05
1.8
65.06
42.6

Associated Gene:

Gene:
R3HDM2
Ensembl Gene ID:
ENSAPLG00000004298
Chromosome:
PEDO01000235.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020823
184337 - 208921
24585
ENSAPLT00000018202
184337 - 236008
51672
ENSAPLT00000004488
184337 - 208921
24585