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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000235.1_187714_187801_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
187714 - 187801
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
TCAAATTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
TTTGCTTCAAAT
Flanking Amino Acid:
QFPRPMGPAQGDGRYSLLGQ
Intron Amino Acid Position:
876

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.3
31.1
Major BPS
77.3
0.68
1
81.5
27
Major PPT
71.6
0.49
0.9
65.7
40.3
Minor 5ss
28.5
-2.5
3.5
37.1
47.5
Minor BPS
61.3
0.43
1.8
81.38
40.3

Associated Gene:

Gene:
R3HDM2
Ensembl Gene ID:
ENSAPLG00000004298
Chromosome:
PEDO01000235.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020823
184337 - 208921
24585
ENSAPLT00000018202
184337 - 236008
51672
ENSAPLT00000004488
184337 - 208921
24585