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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000235.1_190227_190659_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
190227 - 190659
Intron Length:
433

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
GTTCTTTTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
GTTCTTTTGACA
Flanking Amino Acid:
QQLPQQTQQPGLQPMMSNQQ
Intron Amino Acid Position:
606

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
80.4
33.7
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
79
0.65
1
75.8
38.2
Minor 5ss
34.1
-1.8
3.3
45.4
43.9
Minor BPS
65.7
0.49
1.2
72
33.3

Associated Gene:

Gene:
R3HDM2
Ensembl Gene ID:
ENSAPLG00000004298
Chromosome:
PEDO01000235.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020823
184337 - 208921
24585
ENSAPLT00000018202
184337 - 236008
51672
ENSAPLT00000004488
184337 - 208921
24585