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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000235.1_19306_19413_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19306 - 19413
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGCAG
5'SS Class:
major
3'SS Sequence:
GGTGTCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCACAT
U12 Branch Point Sequence:
CCGTCCCCACTC
Flanking Amino Acid:
PRAIALDPRYGILFWTDWDA
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.1
60.5
45.8
Major BPS
52.8
0.07
1.1
60.5
36.2
Major PPT
65.7
0.35
1
55
41.4
Minor 5ss
29.7
-2.3
3.2
30.2
42.9
Minor BPS
41.3
-0.6
2
46.49
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029877
Chromosome:
PEDO01000235.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019871
17552 - 23789
6238