Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000235.1_199472_200676_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

199472 - 200676

Intron Length:

1205

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGCATG

5'SS Class:

strong_major

3'SS Sequence:

TCCGTGCTTCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCCCAT

U12 Branch Point Sequence:

TCCTTCCCATCT

Flanking Amino Acid:

RVRERIFARETGQNGYLTDS

Intron Amino Acid Position:

303

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.7

0.96

0.8

81.8

38.5

Major BPS

72.3

0.55

1.2

80.7

33.2

Major PPT

74.7

0.56

0.9

64.8

41.3

Minor 5ss

-0.8

2.9

56.9

47.4

Minor BPS

44.9

-0.3

2.1

64.08

46.3

Associated Gene:

Gene:

R3HDM2

Ensembl Gene ID:

ENSAPLG00000004298

Chromosome:

PEDO01000235.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020823

184337 - 208921

24585

ENSAPLT00000018202

184337 - 236008

51672

ENSAPLT00000004488

184337 - 208921

24585