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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000235.1_200773_201492_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
200773 - 201492
Intron Length:
720

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
AACTGCTGACCC
Flanking Amino Acid:
DTSMDRDDNQIRLPLQDGRR
Intron Amino Acid Position:
271

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.2
26.4
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
85
0.79
0.7
82.1
29.9
Minor 5ss
32.1
-2
3.5
46.6
48.7
Minor BPS
45
-0.4
2.1
54.65
43.2

Associated Gene:

Gene:
R3HDM2
Ensembl Gene ID:
ENSAPLG00000004298
Chromosome:
PEDO01000235.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020823
184337 - 208921
24585
ENSAPLT00000018202
184337 - 236008
51672
ENSAPLT00000004488
184337 - 208921
24585