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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000235.1_202120_203175_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
202120 - 203175
Intron Length:
1056

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TCCCTGTTCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
GCCTTCTAAATT
Flanking Amino Acid:
QEILEFISDNNNQFKKFPQM
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.2
26.3
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
77.7
0.62
0.8
75.4
33
Minor 5ss
36.1
-1.6
3.3
49.4
41.3
Minor BPS
55.8
0.26
1.7
67.31
44.3

Associated Gene:

Gene:
R3HDM2
Ensembl Gene ID:
ENSAPLG00000004298
Chromosome:
PEDO01000235.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020823
184337 - 208921
24585
ENSAPLT00000018202
184337 - 236008
51672
ENSAPLT00000004488
184337 - 208921
24585