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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000235.1_273839_274314_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

273839 - 274314

Intron Length:

476

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGTTTC

5'SS Class:

strong_major

3'SS Sequence:

GCTGCCGTCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTAAG

U12 Branch Point Sequence:

TTGCCCCCCACT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.9

0.94

0.8

27.9

Major BPS

55.4

0.13

1.6

63.6

42.5

Major PPT

64.1

0.32

53.4

41.5

Minor 5ss

44.9

-0.5

2.8

58.5

40.5

Minor BPS

-0.2

2.3

70.71

45.6

Associated Gene:

Gene:

GLI1

Ensembl Gene ID:

ENSAPLG00000024305

Chromosome:

PEDO01000235.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042248

273743 - 281564

7822