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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000235.1_275396_276021_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
275396 - 276021
Intron Length:
626

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTTAG
5'SS Class:
major
3'SS Sequence:
CTTCTCTCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTGAT
U12 Branch Point Sequence:
CTCCCCAGCACC
Flanking Amino Acid:
EFDTQEQLVHHINNEHIHGE
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
73
34
Major BPS
73.5
0.58
1.2
63.4
44.3
Major PPT
80.7
0.69
0.7
73
31.8
Minor 5ss
36.5
-1.5
2.9
44.7
43.5
Minor BPS
42.8
-0.5
2.1
53.54
43.8

Associated Gene:

Gene:
GLI1
Ensembl Gene ID:
ENSAPLG00000024305
Chromosome:
PEDO01000235.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042248
273743 - 281564
7822